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24 March 2021: Database Analysis

Genome-Scale Analysis Identified , , and as Prognosis Markers of Overall Survival in Gastric Cancer

Zexing Shan ACDE , Wentao Wang B , Yilin Tong B , Jianjun Zhang B*

DOI: 10.12659/MSM.929558

Med Sci Monit 2021; 27:e929558

Table 2 GO analysis of the 144 differentially expressed genes.

CategoryTermCountP valueBenjaminiFDRGenes
GOTERM_BP_DIRECTGO: 0030198 ~extracellular matrix organization215.81E-171.15E-131.78E-13COL4A2, COL4A1, OLFML2B, COL3A1, FBN1, COL2A1, SPARC, NID2, COL5A2, COL5A1, BGN, COL6A3, COL1A2, MFAP2, VCAN, COL1A1, THBS1, COL11A1, SPP1, FN1, COL10A1
GOTERM_MF_DIRECTGO: 0005201 ~extracellular matrix structural constituent139.89E-143.07E-111.33E-10COL4A2, BGN, COL4A1, COL3A1, FBN1, COL1A2, COL2A1, VCAN, COL1A1, MUC5AC, COL5A2, COL11A1, COL5A1
GOTERM_CC_DIRECTGO: 0005576 ~extracellular region424.25E-137.69E-115.24E-10GC, CHIA, IGFBP7, COL3A1, JCHAIN, APOC1, CXCL8, COL2A1, TIMP1, AZGP1, APOE, COL6A3, CPA2, LTF, PDGFD, THBS1, COL11A1, THBS2, SPP1, COL10A1, FN1, ADAM28, COL4A2, COL4A1, OLFML2B, FBN1, GIF, NID2, SPARC, COL5A2, COL5A1, INHBA, BGN, SFRP4, CEMIP, COL1A2, VCAN, MFAP2, COL1A1, CTSB, MUC5AC, LIPF
GOTERM_CC_DIRECTGO: 0031012 ~extracellular matrix205.14E-134.65E-116.33E-10ASPN, COL4A2, COL4A1, IGFBP7, COL3A1, FBN1, COL2A1, NID2, COL5A2, COL5A1, BGN, APOE, COL6A3, COL1A2, VCAN, COL1A1, THBS1, THBS2, MYOC, FN1
GOTERM_CC_DIRECTGO: 0005615 ~extracellular space388.88E-135.36E-111.10E-09GC, CHIA, PGC, IGFBP7, COL3A1, JCHAIN, CXCL8, COL2A1, SERPINH1, ALDH3A1, TIMP1, AZGP1, APOE, SOSTDC1, FAP, COL6A3, CPA2, LTF, PDGFD, THBS1, MYOC, SPP1, FN1, ATP4A, FBN1, GIF, CST1, SPARC, CHGA, SFRP4, SULF1, COL1A2, VCAN, COL1A1, CTSB, MUC5AC, CA2, GKN1
GOTERM_BP_DIRECTGO: 0030574 ~collagen catabolic process122.42E-121.26E-093.85E-09COL4A2, COL4A1, COL3A1, COL6A3, COL1A2, COL2A1, COL1A1, CTSB, COL11A1, COL5A2, COL5A1, COL10A1
GOTERM_CC_DIRECTGO: 0070062 ~extracellular exosome513.44E-101.56E-084.24E-07RARRES1, PGC, IGFBP7, KIAA1324, AZGP1, APOE, LTF, AKR7A3, PDGFD, AKR1C1, ALDH6A1, FBP2, METTL7A, THY1, BGN, AKR1B10, COL1A2, CTSB, CA2, GC, GPRC5C, JCHAIN, APOC1, SERPINH1, PBLD, TIMP1, ALDH1A1, CSE1L, FOLR1, COL6A3, SULT1C2, NEDD4L, THBS1, MYOC, SPP1, FN1, MEST, GSTA1, TMPRSS2, RNASE1, COL4A2, S100P, FBN1, S100A10, NID2, ADGRG2, COL5A1, MUC5AC, FCGBP, HPGD, CDH11
GOTERM_CC_DIRECTGO: 0005581 ~collagen trimer111.32E-094.79E-081.63E-06COL3A1, COL6A3, COL1A2, COL2A1, COL1A1, COL11A1, SERPINH1, COL5A2, COL5A1, COL10A1, TIMP1
GOTERM_CC_DIRECTGO: 0005788 ~endoplasmic reticulum lumen141.55E-094.68E-081.91E-06COL4A2, COL4A1, COL3A1, COL6A3, COL1A2, COL2A1, COL1A1, PDGFD, THBS1, SERPINH1, COL5A2, COL11A1, COL5A1, COL10A1
GOTERM_BP_DIRECTGO: 0071294~cellular response to zinc ion75.25E-091.82E-068.34E-06MT1M, MT2A, MT1E, MT1H, MT1X, MT1G, MT1F
GOTERM_BP_DIRECTGO: 0045926~negative regulation of growth75.25E-091.82E-068.34E-06MT1M, MT2A, MT1E, MT1H, MT1X, MT1G, MT1F
GOTERM_CC_DIRECTGO: 0005578 ~proteinaceous extracellular matrix151.01E-082.62E-071.25E-05ASPN, OLFML2B, FBN1, SPARC, COL5A2, COL5A1, TIMP1, BGN, COL6A3, COL1A2, VCAN, COL11A1, MYOC, FN1, COL10A1
GOTERM_MF_DIRECTGO: 0048407 ~platelet-derived growth factor binding61.07E-081.66E-061.44E-05COL4A1, COL3A1, COL1A2, COL2A1, COL1A1, COL5A1
GOTERM_BP_DIRECTGO: 0030199~collagen fibril organization81.97E-085.12E-063.13E-05COL3A1, COL1A2, COL2A1, COL1A1, COL11A1, SERPINH1, COL5A2, COL5A1
GOTERM_MF_DIRECTGO: 0050840 ~extracellular matrix binding61.39E-061.44E-040.001872262BGN, OLFML2B, SPARC, THBS1, COL11A1, SPP1
GOTERM_CC_DIRECTGO: 0005604 ~basement membrane81.76E-063.99E-050.002172174COL4A1, FBN1, COL2A1, NID2, SPARC, THBS2, COL5A1, TIMP1
GOTERM_BP_DIRECTGO: 0007155 ~cell adhesion163.26E-066.77E-040.005182285ATP4B, IGFBP7, NID2, COL5A1, THY1, AZGP1, FAP, COL6A3, VCAN, COL1A1, THBS1, GPNMB, THBS2, SPP1, FN1, CDH11
GOTERM_BP_DIRECTGO: 0071276~cellular response to cadmium ion58.02E-060.0013865890.012731623MT1E, MT1H, MT1X, MT1G, MT1F
GOTERM_BP_DIRECTGO: 0007586~digestion79.91E-060.0014679510.015725541CHIA, CCKBR, PGC, AKR1B10, CAPN9, GKN1, AKR1C1
GOTERM_BP_DIRECTGO: 0001501~skeletal system development91.26E-050.0016321590.019983654COL3A1, FBN1, COL1A2, COL2A1, VCAN, COL1A1, COL5A2, COL10A1, CDH11
GOTERM_MF_DIRECTGO: 0005178 ~integrin binding81.58E-050.0012239830.021220906FAP, COL3A1, FBN1, THBS1, GPNMB, COL5A1, FN1, THY1

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Medical Science Monitor eISSN: 1643-3750
Medical Science Monitor eISSN: 1643-3750