11 August 2020: Review Articles
Current Status of Research on the Role of Circular RNAs in Hepatocellular Carcinoma and Clinical ImplicationsRen-Chao Zou1E, Ling-Lin Li23CDE, Hong-Ling Yuan2A*
Med Sci Monit 2020; 26:e923832
ABSTRACT: The latest statistics show that rates of morbidity and mortality for hepatocellular carcinoma are gradually increasing over time. Accumulating evidence indicates that circular RNAs (circRNAs) participate in the regulation of gene transcription and translation and exert a crucial role in endogenous RNA network. circRNAs are implicated in the pathogenesis of numerous tumors including hepatocellular carcinoma (HCC), gastric carcinoma and bladder cancer. Of note, the effect of circRNAs in HCC has drawn increasing public attention. Previous studies revealed that the function of circRNAs mainly consists of sponges of miRNA and RNA-binding proteins, alternative splicing of pre-mRNAs, transcriptional and translational regulators, and potential to encode proteins. In addition, recent research data indicate that the expression level of circRNAs is closely correlated with metastasis, invasion, and occurrence of HCC in patients. These findings imply that circRNAs may be useful as biomarkers for diagnosis and prediction of prognosis of HCC. In this review, we have systemically summarized current viewpoints regarding the role of circRNAs expression in HCC to provide an important reference illustrating the underlying mechanism of HCC.
Keywords: Biological Markers, Carcinoma, Hepatocellular, Gene Expression, Biomarkers, Tumor, Liver Neoplasms, MicroRNAs, Neoplasm Invasiveness, Neoplasm Metastasis, Prognosis, RNA, Circular, RNA-Binding Proteins
Hepatocellular carcinoma (HCC) is a common disease that seriously threatens human health worldwide. Prevalence of the disease and deaths due to it are a continuously increasing with development of the economy and the environment [1–3]. The prognosis for HCC patients remains extremely poor although significant progress has been achieved. Strategies for early diagnosis are urgently needed because the majority of patients with HCC are diagnosed in very late stages. However, the molecular mechanism of HCC has not been clearly defined. Circular RNAs (circRNAs) are a new class of RNA molecules that have functions as regulators of parental gene transcription, in alternative splicing, and as miRNA sponges . Through use of RNA deep sequencing gtechnology, numerous circRNAs have been identified as the predominant regulatory elements in diseases . Moreover, accumulating evidence shows that circRNAs play pivotal roles in many diseases. In particular, abnormally expressed circRNAs are involved in tumor progression including cell proliferation, migration, and invasion [6–8]. In addition, some research indicates that circRNAs level are closely correlated wit specific phenotypes and tumorigenesis in HCC [9–11]. Nevertheless, the research concerning circRNAs is frankly in its infancy, which greatly hinders the application of circRNAs as biomarkers for diagnosis of HCC in clinics.
Related research shows that circRNAs possess great potential to be used for diagnosis of HCC [12,13]. Recent studies have found that hsa_circ_0067934 plays oncogenic roles by accelerating cell proliferation and metastasis in glioblastoma (GBM) [14,15]. circ-SMARCA5 was significantly elevated, and thereby suppressed cell apoptosis and arrested cell cycle in prostate cancer . In addition, previous studies have shown that downregulation of hsa_circ_0005986 facilitated cell proliferation by promoting the G0/G1 to S phase transition in HCC . Similarly, alteration in expression of circRNAs correlated with development and metastasis of malignant tumors . These data suggest that circRNAs may be of greater benefit in clinical diagnosis of HCC. However, reliable circRNA biomarkers for HCC are still lacking. Therefore, this review synthetically integrates available data on the role of circRNA in HCC progression, and attempts to provide crucial clues for investigating the molecular mechanism regarding HCC.
Overview of circRNA
CircRNAs are a category of single-stranded, closed-circle molecules, which take part in multifaceted biological regulation . Recently, research has verified that the majority of circRNAs are synthesized by back-spliced exons, and that others are formed from intron, intergenic, and untranslated regions (UTR). Therefore, biogenesis of circRNAs can be divided into EIciRNAs (exon-intron circRNAs), ecircRNAs (circular exonic RNAs), and ciRNAs (circular intronic RNAs) . Meanwhile, over 20,000 circRNAs have been identified , and this type of transcript has been considered a new form of gene expression . Generally, the structure of the transcription is inverted, and the order of genomic exons is altered and these exons are spliced. Over time, the biological functions of circRNAs gradually have been recognized, including roles in embryonic development, maintainenance of homeostasis, and promotion of tumor progression (Figure 1) .
Properties of circRNAs
circRNAs recently have attracted great attention related to their pathological role in disease development. Compared with linear RNAs, circRNAs have special properties, including biological roles and clinical use. circRNAs are mainly enriched in certain body fluids comprising blood, saliva, and urine [24,25]. They are covalently closed loop structures . Degradation of most RNA is highly dependent on RNA exonuclease or RNase. Hence, circRNAs remain highly stable based on their high resistance to enzyme degradation . Moreover, studies have shown that expression of circRNAs is tissue-specific and correlated with different phases of development [28,29], and they exhibit different expression patterns at different developmental stages [21,30].
Roles of circRNAs
Accumulating evidence shows that circRNAs play a crucial role in the pathogenesis of diseases as a result of their complex biological functions. Generally, the molecular functions of circRNAs mainly include being sponges of miRNA, acting as RNA-binding proteins, performing alternative splicing of pre-mRNAs, regulating transcription and translation, and potentially encoding proteins. These properties are described in detail below.
Sponges of miRNA
The different types of circRNAs have different miRNA binding sites. Some circRNAs negatively regulate miRNAs by absorbing and specifically binding to miRNAs, then decreasing miRNA activity and elevating expression of miRNA-related target genes [31,32]. Researchers have shown that ciRS-7 inhibits miR-7 function, and positively mediates miR-7 target genes, acting as a molecular sponge . In addition, functional analyses have indicated that circRNAs constitute an entire molecular regulatory network which specifically regulates degradation of miRNAs as miRNA sponges .
RNA binding proteins (RBPs) are a broad class of proteins involved in gene transcription, translation, and interaction. Studies suggest that distribution of RBPs is widespread, in many tissue types. Furthermore, RBPs participate in development of disorders by regulating post-transcriptional regulation of RNAs. RBPs assemble ribonucleoprotein complexes to bind RNA sequences, thereby affecting the function of the target RNAs . Previous research has shown that circRNAs serve as protein decoys to harbor binding sites of specific proteins and block protein activity. Circ-Foxo3 induces cell cycle arrest, resulting in defective CDK2 gene function by binding to p21 and CDK2 . Moreover, circRNA cia-cGAS binds to cGAS protein and suppresses enzymatic activity of cGAS, thereby preventing cGAS from recognizing self-DNA .
circRNAs Regulate Alternative Splicing, Transcription and Translation
Cellular localization of most circRNAs is cytoplasmic, which is the basis for the biological function of miRNA and protein decoys. Several studies have suggested that circRNAs participate in RNA splicing, assembly, and biosynthesis. Recently, research has shown that circRNAs may play pivotal roles in regulating alternative splicing, transcription, and translation. In addition, the exon of the splicing factor may form a circRNA by affecting formation of linear RNA. EIciRNAs interact with the U1 small nuclear ribonucleoprotein(snRNP), thereby regulating parental gene transcription by binding to RNA polymerase II .
Interestingly, translation of circRNAs is mediated by IRES and N6-methyladenosine (m6A), and translation efficiency of circRNA is regulated by the level of m6A modification . Moreover, circFBXW7 effectively inhibits glioma proliferation and cell cycle progression by antagonizing USP28-induced c-Myc stabilization .
Potential to Encode Proteins
circRNAs are implicated in numerous physiological processes and pathogenesis of diseases. Strong evidence indicates that circRNAs can encode proteins by mimicking DNA rolling circle amplification . Related studies indicate that circRNA circPPP1R12A plays a key molecular role by encoding a functional protein (circPPP1R12A-73aa), which promotes proliferation, migration, and invasion of colon cancer . circANRIL interacts with pescadillo zebrafish homolog 1 (PES1) to mediate ribosome biogenesis and pre-rRNA processing in vascular macrophages and smooth muscle cells . These studies have significantly increased the knowledge base about the biological functions of circRNAs.
circRNAs in Diseases
circRNAs are involved in processes that lead to development of various disorders, such as neuronal and cardiovascular diseases, and cancers. circRNAs participate in regulating gene transcription and protein expression, and are indirectly and directly associated with time- and region-specific variations [30,44]. As mentioned previously, abnormal expression of circRNAs is implicated in neurological disorders [28,45,46]. Atherosclerosis and ribosomal RNA maturation reportedly are regulated by circANRIL . Simultaneously, some studies have suggested that circRNAs upregulation significantly affects sprouting and proliferation of vascular endothelial cells, and elicits vascular dysfunction [47,48]. Recently, several experiments have implicated circRNAs in pathogenesis of cancer via activation of a series of cascade reactions. However, the underlying mechanism for the effect of circRNAs in initiation and progression of tumors has not been fully clarified . To date, related studies have revealed that certain circRNAs are highly expressed in tumor tissues, and overexpression of circRNAs promotes tumor proliferation and deterioration. An investigation revealed that Hsa_circ_002059 was downregulated in gastric cancer , while hsa_circ_0004018 was upregulated in HCC . Meanwhile, tumor-specific circRNAs candidates were screened in lung adenocarcinoma tissue by microarrays and 59 circRNAs were identified (20 down-regulated and 39 up-regulated) . Of the 59 circRNAs, hsa_circ_0013958 clearly was positive correlated with lymph node metastasis and TNM stage. These findings indicate that circRNAs have important roles in tumor progression, and may have potential for broad applicatoins in medicine science.
Overview of HCC
HCC is one of the most prevalent tumors worldwide, with 21 000 diagnoses and approximately 700 000 deaths annually [51,52]. Epidemiological survey data indicate that morbidity and mortality from HCC are gradually increasing . Risk factors for HCC include diabetes mellitus, obesity, smoking, alcohol consumption, older age, male sex, chronic HBV, liver cirrhosis, and chronic hepatitis C virus (HCV). The primary risk factors include liver cirrhosis, viral hepatitis, alcohol intake, and obesity . Worldwide, approximately 50% HCC patients are infected with hepatitis B virus (HBV) [54,55] or HCV [56,57]. In addition, alcohol abuse is a crucial factor for onset of HCC [58–60]. Obesity, hypertension, and diabetes are closely linked with development of HCC, but specific correlations remain unknown . Moreover, regular screening has been widely applied for early detection and to ensure effective treatment of HCC. Most commonly, good results have been achieved with regular screening with ultrasonography, blood alpha-fetoprotein content testing, MRI, and CT [62,63].
Generally, surgical resection and chemotherapy are mainstays of therapy in patients with HCC. Yet, some tumors cannot be fully removed, which results in tumor growth, invasion, and metastasis. Local and systemic metastases are the main reasons for the unsatisfactory prognosis in patients with HCC. Therefore, more effective therapeutic approaches need to be developed.
Roles of circRNAs in HCC
Numerous studies have documented the important role that circRNAs play in tumorigenesis, metastasis, and invasion. Research has shown that circRNAs are localized in the nucleus and interfere with transcription and promote alternative splicing. circPVT1 is overexpressed in gastric cancer tissues compared with non-tumor tissues, and circPVT1 acts as an oncogene to mediate expression of miR-497-5p . However, studies concerning the role of circRNAs in development and progression of HCC remain in their infancy.
Currently, circRNAs are considered promising diagnostic biomarkers and ideal therapeutic targets for HCC [65,66]. Studies have revealed that circ-ITCH inhibits tumor proliferation by suppressing the Wnt/beta-Catenin pathway. Expression of circ-ITCH has been positively correlated with good survival outcome in patients with HCC . Analysis of the circRNAs expression profile in human HCC tissues showed that circMTO1 was markedly decreased in HCC tissues and that expression of circMTO1 was positively correlated with survival rate. circMTO1 reportedly inhibits HCC progress by sponging miR-9 and thereby increasing p21 expression . Meanwhile, overexpression of hsa_circ_0001649 negatively affects invasion and proliferation and promotes apoptosis of HCC cells . Downregulation of ZKSCAN1 and circZKSCAN1 enhances cell proliferation and promotes progression of HCC .
In patients with HCC, Cdr1was more abundant in tumor specimens than in adjacent normal tissues. Cdr1as effectively suppresses the invasion and proliferation of HCC cells by targeting miR-7 [71,72]. Some reports have shown that hsa_circ_0000673 is significantly upregulated in HCC tissues and hsa_circ_0000673 downregulation markedly inhibits proliferation and invasion of HCC cells in vitro . Meanwhile, a positive correlation was found between circ_001569 expression level and tumor size, advanced TNM stages, and unfavorable prognosis in patients with HCC . circRNA-101368 was abundantly expressed in HCC tissue, which correlated with poorer prognosis. In addition, circRNA-101368 inhibited cell migration by reducing protein levels in NF-κB, RAGE and HMGB1 (Figure 2) .
Previous studies have shown that circRNAs are closely related to development of tumors. Clinicopathological features in patients with HCC are correlated to with levels of expression of ciRS-7 and its targeted mRNAs . Global circRNA expression profile analysis showed that hsa_circ_0005075 exhibited significant differences in tumor tissue versus adjacent tissues in patients with HCC. Expression of hsa_circ_0005075 also was related to tumor proliferation and metastasis . Therefore, an increasing number of circRNAs have been identified as diagnostic markers, as summarized in Table 1 .
Given the high incidence and mortality fo HCC worldwide, it is one of the most serious diseases threatening human health. Increasing attention is being paid due to this serious situation . Evidence is increasing to support the close association between circRNAs progression of HCC. circRNAs may play an important role in the occurrence and development of tumors. However, the molecular mechanism underlying the relationship between circRNAs and HCC has not been fully elucidated. Therefore, in-depth research is needed on the potential regulatory relationships, and to uncover regulatory patterns between circRNAs and HCC so that new diagnostic markers for HCC can be developed.
FiguresFigure 1. Biogenesis of circular RNAs . (A) Lariat-driven circularization. The 3′ hydroxyl of the upstream exon reacts with the 5′ phosphate of the downstream exon to form a covalent linkage, then producing a lariat including exons and introns. The 2′ hydroxyl of the 5′ intron interacts with the 5′ phosphate of the 3′-intron to form an ecircRNA following an interaction between the 3′ hydroxyl of the 3′ exon and the 5′ phosphate of the 5′ exon. (B) RNA-binding protein (RBP)-driven circularization. RBPs accelerate interaction of the downstream intron and upstream intron, thereby promoting formation of ecircRNA. (C) Base-pairing-driven circularization. The downstream introns and upstream introns are paired depends on inverse-repeating/complementary sequences. Formation of ecircRNA/EIciRNA was derived from the introns are removed/retained. (D) Biosynthesis of ciRNA. Formation of ciRNAs mainly based on a 7-nt GU-rich element and an 11-nt C-rich element to escape debranching and exonucleolytic degradation. (E) Formation of tricRNA. tRNA splicing enzymes divide pre-tRNA into two parts: TricRNAs are generated by a 3′–5′ phosphodiester bond and the other part generates tRNAs. Figure 2. The function of circRNAs in HCC carcinogenesis. This graph demonstrates the role of circRNAs in HCC carcinogenesis, including positive and negative effects, respectively.
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